
Research
I'm an AI researcher building foundation models and reasoning systems for scientific discovery. I currently lead on foundation model research within AI & Robotics at the Ellison Institute of Technology. Previously, at Microsoft Research, I was a first author on Aurora, a foundation model for the Earth system, built on a 3D Swin Transformer backbone with a Perceiver-based encoder, that set a new state of the art for weather forecasting and Earth-system prediction (published in Nature, 2025). I came to machine learning from physics, with a PhD from Cambridge, and have spent close to a decade doing AI research in industry.
I work across the full research lifecycle, framing the questions that matter, developing new methods and architectures, training and scaling the systems, validating them against data, and translating them into real-world impact. I lead research and mentor others, but like to stay hands-on: I still design models, write code, and run experiments.
My research centres on AI systems that build and refine internal models of complex domains, world models, and that improve through interaction with data, tools, simulation, and empirical feedback. Foundation models have dramatically expanded what AI can represent and reason about, but many scientific problems also demand systems that can form hypotheses, test them, and update against observation, experiment, and verification.
I'm particularly interested in reasoning systems, world models, foundation models, and scientific AI, and in architectures that couple learned representations with external tools, simulation, and verification. My goal is to build systems capable of robust reasoning, discovery, and adaptation, and to apply them to problems where they can create real scientific and real-world impact.
Experience
Ellison Institute of Technology · Oxford
Microsoft Research AI for Science · Cambridge & Amsterdam
Faculty Science Ltd · London
UCSF Department of Radiology, Brain Networks Laboratory · San Francisco
University of Cambridge · Cambridge
Selected Publications
Aurora: A Foundation Model for the Earth SystemNature 2025
C. Bodnar*, W. P. Bruinsma*, A. Lucic*, M. Stanley*, et al.
Nature 641, 1180–1187 (2025)· *equal contribution
Accurate and scalable exchange-correlation with deep learning
G. Luise et al.
arXiv:2506.14665 (2025, under review at Nature)
Hard Meta-Dataset: Towards Understanding Few-Shot Performance on Difficult TasksICLR 2023
S. Basu, J. Bronskill, M. Stanley, D. Massiceti, S. Feizi.
ICLR (2023)
Fake it until you make it? Generative de novo design and virtual screening of synthesizable molecules
M. Stanley, M. Segler.
Current Opinion in Structural Biology 82 (2023)
Re-evaluating Retrosynthesis Algorithms with SyntheseusNeurIPS 2023
K. Maziarz, A. Tripp, G. Liu, M. Stanley, et al.
NeurIPS AI4Science Workshop (2023) / Faraday Discussions 256, 568–586
FS-Mol: A Few-Shot Learning Dataset of MoleculesNeurIPS 2021
M. Stanley, J. Bronskill, K. Maziarz, H. Misztela, J. Lanini, M. Segler, N. Schneider, M. Brockschmidt.
NeurIPS (2021)
Shapley explainability on the data manifoldICLR 2021
C. Frye, D. de Mijolla, M. Stanley, T. Begley, L. Cowton, I. Feige.
ICLR (2021)
Phase-tuned entangled state generation between distant spin qubits
R. Stockill*, M. J. Stanley*, L. Huthmacher*, E. Clarke, M. Hugues, A. J. Miller, C. Matthiesen, C. Le Gall, M. Atatüre.
Phys. Rev. Lett. 119, 010503 (2017)· *equal contribution
Controlling the coherence of a diamond spin qubit through its strain environment
M. J. Stanley et al.
Nature Communications 9, 2012 (2018)
Single-photon emission from single-electron transport in a SAW-driven lateral light-emitting diode
M. J. Stanley et al.
Nature Communications 11, 1–7 (2020)
Full counting statistics of quantum dot resonance fluorescence
C. Matthiesen*, M. J. Stanley*, M. Hugues, E. Clarke, M. Atatüre.
Scientific Reports 4, 4911 (2014)· *equal contribution
Education
PhD Physics
University of Cambridge · 2017
MSci Physics · First Class Honours
University of Cambridge · 2011
BA Physics · First Class Honours in all years
University of Cambridge · 2010
Awards